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authorbnewbold <bnewbold@robocracy.org>2014-04-09 22:17:26 -0400
committerbnewbold <bnewbold@robocracy.org>2014-04-09 22:17:26 -0400
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dmmsb2014-14cf4824f32727704c265bf9de1d209a5019f8f0.zip
commit notes
-rw-r--r--notes/lec01_intro17
-rw-r--r--notes/lec02_matlab124
-rw-r--r--notes/lec03_matlab214
3 files changed, 55 insertions, 0 deletions
diff --git a/notes/lec01_intro b/notes/lec01_intro
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+
+top down approach:
+ start with data, do stats, make predictions
+ see also Ma'ayan coursera course, "Network Analysis in Systems Bio"
+
+bottom up approach:
+ start with a model, run simulations to make predictions
+ scope: ODE, dynamics
+ beyond: parameter estimations, PDE, stochastics
+
+7 weeks, 25 lectures, 20 minutes each, 3-4 a week
+questions at the end of lectures, "just for self"
+5x homework assignments, required
+
+will discuss neuron firing a bit
+
+impression: will be very motivated
diff --git a/notes/lec02_matlab1 b/notes/lec02_matlab1
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+
+'format compact' => less syntax
+
+self assess:
+ C) 13x4
+ E) vertcat; different columns
+
+### julia notes:
+
+built-in types seem to default to just an array instead of, eg, 3x1 or 1x3.
+
+can transform with "'"; A'' != A?
+
+to vert/horiz cat, need to explicitly
+
+julia> size([1,2,3])
+(3,)
+
+julia> size([1,2,3]')
+(1,3)
+
+julia> size([1,2,3]'')
+(3,1)
+
diff --git a/notes/lec03_matlab2 b/notes/lec03_matlab2
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+
+### julia notes
+
+for plotting, 'winston' is simple and matlab-like
+ 'gadfly' is nice/correct, using design paradigms
+ 'pyplot' is matplotlib
+
+for this class, at least to start, i'm going to try winston.
+
+Pkg.add("Winston")
+using Winston
+plot( cumsum(randn(1000)) )
+
+in winston, fplot() is nice for plotting functions over ranges